PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34127
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 188aa    MW: 21279 Da    PI: 8.6122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34127genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013728223
                               EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                               +Cp+C+k Fs+   L  H++ H
  Tp57577_TGAC_v2_mRNA34127  7 VCPICDKLFSNGKALGGHMKAH 28
                               6******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.32E-5333No hitNo description
PROSITE profilePS5015710.055633IPR007087Zinc finger, C2H2
PfamPF139122.6E-8730IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MENKGRVCPI CDKLFSNGKA LGGHMKAHLA KLPLPPKPSM ESTKHSTHFN ARSDPIPNLR  60
SLKRNFCYAL ANSGGNSTFE FYPKIPTGKR SKRQRKQFIV AEEKEDITQS NEAKENAENT  120
QCKIVYNNTD LELAETIVFM NRKEWQQINE KYLGEEVGRS GNEDVELDQV REEHMKVYFS  180
GPVVSNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516354.17e-51PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A072UTD13e-48A0A072UTD1_MEDTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1731457